Section 49 of CGST Act: Payment of Tax, Interest, Penalty and Other Amounts
Section 49 of the Central Goods and Services Tax Act, 2017 governs the electronic cash ledger, electronic credit ledger, electronic liability register, utilisation of input tax credit, priority of payment, refunds of ledger balances and specified transfers from the electronic cash ledger.
Law position reviewed: 15 September 2026Meaning and Purpose of Section 49
Section 49 provides the statutory framework for paying GST and other amounts through the GST electronic ledgers. In practical terms, money deposited by a taxpayer is reflected in the electronic cash ledger, eligible self-assessed input tax credit is reflected in the electronic credit ledger, and amounts payable are recorded in the electronic liability register.
The provision must be read with Sections 49A and 49B and the relevant CGST Rules, particularly Rules 85, 86, 87 and 88A. The electronic credit ledger is not a general-purpose cash account: its use is confined to permitted output-tax liabilities and remains subject to statutory and prescribed conditions and restrictions.
Section 49 - Updated Provision
Section 49(1) - Electronic Cash Ledger
Every deposit made towards tax, interest, penalty, fee or any other amount through the prescribed payment modes, and subject to the prescribed conditions and restrictions, is credited to the electronic cash ledger of the person.
Section 49(2) - Electronic Credit Ledger
Input tax credit self-assessed in the return of a registered person is credited to the electronic credit ledger in accordance with Section 41 and is maintained in the prescribed manner.
Section 49(3) - Use of Electronic Cash Ledger
The amount available in the electronic cash ledger may be used for payment of tax, interest, penalty, fee or any other amount payable under the CGST Act or the rules, subject to the prescribed manner, conditions and time.
Section 49(4) - Use of Electronic Credit Ledger
The amount available in the electronic credit ledger may be used towards payment of output tax under the CGST Act or the Integrated Goods and Services Tax Act, 2017, subject to the prescribed manner, conditions, restrictions and time.
Section 49(5) - Basic Cross-Utilisation Rules for ITC
- IGST credit is first used for IGST; the balance may be used for CGST and SGST/UTGST in the applicable order.
- CGST credit is first used for CGST and the balance may be used for IGST.
- SGST credit is first used for SGST and the balance may be used for IGST. SGST credit is used for IGST only where the balance of CGST credit is not available for payment of IGST.
- UTGST credit is first used for UTGST and the balance may be used for IGST. UTGST credit is used for IGST only where the balance of CGST credit is not available for payment of IGST.
- CGST credit cannot be used for payment of SGST or UTGST.
- SGST or UTGST credit cannot be used for payment of CGST.
Section 49(6) - Refund of Ledger Balance
The balance in the electronic cash ledger or electronic credit ledger after payment of tax, interest, penalty, fee or other amounts may be refunded in accordance with Section 54, subject to the conditions governing the particular refund claim.
Section 49(7) - Electronic Liability Register
All liabilities of a taxable person under the CGST Act are recorded and maintained in an electronic liability register in the prescribed manner.
Section 49(8) - Order of Discharge of Tax and Other Dues
Tax and other dues are discharged in the following statutory order:
- self-assessed tax and other dues relating to returns of previous tax periods;
- self-assessed tax and other dues relating to the return of the current tax period; and
- any other amount payable under the Act or rules, including a demand determined under Section 73, Section 74 or Section 74A.
The reference to Section 74A in clause (c) has applied from 1 November 2024. Section 74A is the demand provision applicable to determination of tax for Financial Year 2024-25 onwards.
Section 49(9) - Presumption of Passing on Tax Incidence
A person who has paid tax on goods or services or both is presumed, unless the contrary is proved, to have passed on the full incidence of that tax to the recipient. This principle is relevant to the statutory scheme concerning unjust enrichment and refunds.
Explanation to Section 49
The date on which the amount is credited to the Government account in the authorised bank is treated as the date of deposit in the electronic cash ledger. For this section, tax dues means tax payable under the Act and excludes interest, fee and penalty; other dues means interest, penalty, fee or any other amount payable under the Act or rules.
Section 49(10) - Transfer of Electronic Cash Ledger Balance
A registered person may, on the common portal and subject to prescribed conditions and restrictions, transfer an available amount of tax, interest, penalty, fee or other amount in the electronic cash ledger to the electronic cash ledger for:
- IGST, CGST, SGST, UTGST or cess; or
- IGST or CGST of a distinct person specified in Section 25(4) or Section 25(5).
A transfer to a distinct person under clause (b) is not permitted where the transferring registered person has an unpaid liability in the electronic liability register. Such transfer is deemed to be a refund from the electronic cash ledger under the Act.
Section 49(11) - Deemed Deposit after Transfer
Where an amount is transferred to the electronic cash ledger under the Act, it is deemed to have been deposited in that ledger as provided in Section 49(1).
Section 49(12) - Restriction on Discharge through Electronic Credit Ledger
Notwithstanding anything contained in the Act, the Government may, on the recommendations of the GST Council and subject to conditions and restrictions, specify the maximum proportion of output tax liability under the CGST Act or IGST Act that may be discharged through the electronic credit ledger by a registered person or a prescribed class of registered persons.
Electronic Ledgers under Section 49
| Ledger | Purpose | Key Rule / Form |
|---|---|---|
| Electronic liability register | Records tax, interest, penalty, late fee and other liabilities. | Rule 85; FORM GST PMT-01 |
| Electronic credit ledger | Records eligible input tax credit and permitted utilisation. | Rule 86; FORM GST PMT-02 |
| Electronic cash ledger | Records cash deposits and payments of tax and other amounts. | Rule 87; FORM GST PMT-05 |
| Cash-ledger transfer | Transfers eligible balances between heads and, where permitted, to CGST/IGST cash ledger of a distinct person. | Rule 87; FORM GST PMT-09 |
Order and Restrictions for Utilisation of Input Tax Credit
Section 49(5) is not read in isolation. Section 49A requires available IGST credit to be fully utilised first before CGST, SGST or UTGST credit is used in the prescribed manner. Section 49B authorises prescription of the order and manner of utilisation, and Rule 88A addresses the order of utilisation of IGST credit.
CBIC has also clarified that electronic credit ledger balance may be used for payment of output tax, including output tax payable as a consequence of proceedings under GST law, but not for liabilities that do not fall within the statutory meaning of output tax, such as reverse-charge tax. Taxpayers should therefore distinguish between a liability that can legally be discharged through ITC and one that must be discharged through the electronic cash ledger.
Legal Update Note
This page has been redrafted to reflect the current consolidated text of Section 49, including the 2022 changes concerning restrictions and cash-ledger transfers and the amendment effective from 1 November 2024 adding Section 74A to Section 49(8)(c). The statutory text and rules should always be checked with the latest official notifications before acting on a specific transaction or dispute.